
			Institut for Matematik og Datalogi

Jakob Lykke Andersen

Scripts

SARS: for remaining online on SDU WLAN without a browser window. Made by Morten Skyt and modified by Bjørn Madsen
getCores: make a file with computer names and number of cores in the CPUs. The file is used by the ping script. (it is not possible to connect to tristan right now, so the name is worng in the script)
ping: get status of the terminal room by pinging.

LaTeX

Graphviz and OpenBabel

Put the content of graphviz.tex in the preamble. Use pdflatex as compiler with the -shell-escape option (don't use that option with code you don't trust!). The following macros are now available. The should all be used as substitude for \includegraphics. The options in all macros can be omitted, and they will be passed down to \includegraphics.

\graphvizBase[options]{layout engine}{complete graph data}: for compiling and including a general graphviz graph.
\neatoGraph[options]{graph data}: expands to \graphvizBase[options]{neato}{graph {graph data}}
\neatoDigraph[options]{graph data}: expands to \graphvizBase[options]{neato}{digraph {graph data}}
\obabel[options]{smiles string}: uses OpenBabel to draw the molecule in 2D.

The graphviz macros requires graphviz to be installed and have dot in the path. The obabel macro requires OpenBabel 2.3 or higher to be installed and have obabel in the path.
See also a blog post (and in general the blog), for additional information.

Contact Information

E-mail: jlandersen@imada.sdu.dk

Jakob Lykke Andersen

Scripts

LaTeX

Graphviz and OpenBabel

Links

Contact Information